Have you looked at how that person created the weak aura to see if you can make several to monitor different reputations ? I've never used weakauras so don't know what it can and can't do.
The only other way to monitor multiple reputations, as far as I am aware, is via the addon suggested or create your own addon to do what you want.
So .. your options are
1. Use the existing weak aura option to monitor the current favourite.
2. See if you can create multiple weak auras similar to the one found to monitor different factions.
3. Use an existing addon that allows multiple reputation bars
4. Create your own addon that does what you want.
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